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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G16590.1 | ||||||||
Common Name | LOC102717325 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 328aa MW: 35411.1 Da PI: 6.261 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.4 | 3.4e-15 | 110 | 161 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++Y+k+L+ OB03G16590.1 110 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVKELE 161 79****************************...*******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.03E-13 | 108 | 165 | No hit | No description |
PROSITE profile | PS50888 | 16.177 | 109 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-14 | 110 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-17 | 110 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-12 | 110 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-11 | 115 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MALEAVVFPQ GHFGYGCGRD SPAYGMPWCD VLGGGGGGGF GEFCGVDEWD DQLRVASVDE 60 WDVVSKDHSD ASTEGKAPAP APERAAPVAA GRRKRRRTKV IKNKEEIECQ RMTHIAVERN 120 RRRQMNEYLA VLRSLMPPSY AQRGDQASIV GGAINYVKEL EQLLQSLEVQ KSLKNRTAGM 180 DAGEDSPFSG FFSFPQYCTS SRSGCSSASA GSSGNASSVV MDDTAGSAER VRPAAIADIE 240 VTMVEGHASL KVLARRRPKQ LLKLVVGLQQ LRIPPLHLNV TTVDAMVLYS FSLKVEDDSK 300 LGSVEDIATA VHEILGSIQQ QEAVLPIS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 96 | RKRRR |
2 | 92 | 97 | RKRRRT |
3 | 110 | 121 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107555 | 0.0 | AK107555.1 Oryza sativa Japonica Group cDNA clone:002-130-B03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006649528.1 | 0.0 | PREDICTED: transcription factor bHLH96-like | ||||
Swissprot | Q9C7T4 | 3e-85 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | J3LKT3 | 0.0 | J3LKT3_ORYBR; Uncharacterized protein | ||||
STRING | OB03G16590.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP741 | 38 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 3e-61 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102717325 |